Installation

NeuTomPy toolbox supports Linux, Windows and Mac OS 64-bit operating systems.

First of all, install a Conda python environment with Python 3.6 and then activate it:

conda create -n ntp_env python=3.6
conda activate ntp_env

Install some dependencies:

conda install -c simpleitk simpleitk
conda install scikit-image
conda install ipython numexpr astropy tifffile mkl_fft tqdm
conda install -c astra-toolbox astra-toolbox
pip install opencv-python read-roi
pip install -U numpy

Finally, install NeuTomPy toolbox via pip:

pip install neutompy

NB: If a segmentation fault occurs when importing NeuTomPy, install PyQt5 via pip:

pip install PyQt5

Update

To update a NeuTomPy installation to the latest version run:

pip install neutompy --upgrade